· Delarue web servers
· PDB_Hydro Flow chart
· Modify PDB structures
  · Change sequence (decorate)
  · Fix missing side chains
  · Single point mutations
  · Flip HNQ side chains
  · Generate loops
  · Refine sidechain torsions
· Solvate PDB structures
  · Build polar H's & charges
  · Solvate using GPBL
  · Place Waters
  · All in one
· References
· Homes/Links
· Job queue status

PDB Fixer

This site provides facilities to mutate and change side-chains of a PDB file automatically.

This will also allow for repairing missing side-chains in a PDB file, constructing polar hydrogen atoms and assigning partial charges for electrostatic calculations.

Choose an option in the menu on the left and use the following flow chart as a guide... Flow chart




  Marc Delarue http://lorentz.immstr.pasteur.fr
Page last modified 11:04 March 01, 2006.