· Delarue web servers
· PDB_Hydro Flow chart
· Modify PDB structures
  · Fix missing side chains
  · Flip HNQ side chains
  · Refine sidechain torsions
  · Single point mutations
  · Change sequence (decorate)
  · Generate loops
· Solvate PDB structures
  · Assign charges (PQR)
  · Solvate using GPBL
  · Place Waters
  · All in one
· NEW !!! AQUASOL !!!
  · Run AquaSol
· References
· Homes/Links
· Job queue status

Mutate & Solvate

This site provides tools for mutating and solvating PDB files using new methodologies developed recently in the lab.
It identifies strongly and poorly solvated exposed surfaces on proteins (see Figure below) and helps identify potential protein-interaction zones.

Pick a choice in the menu to the left and play around with it - things are still in development.

If you find this site useful, please cite this Reference.

  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 09:38 December 20, 2010.